If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 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'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' => 'car', 'Ca_09508_v3' => 'car', 'Ca_16703_v3' => 'car', 'Ca_17475_v3' => 'car', 'Ca_22867_v3' => 'car', 'Ca_24496_v3' => 'car', 'Ca_29489_v3' => 'car', 'Ca_30057_v3' => 'car', 'CBR_g27876' => 'cbr', 'Cc02_g01610' => 'ccan', 'Cc02_g39410' => 'ccan', 'Cc04_g08180' => 'ccan', 'Cc06_g20760' => 'ccan', 'Cc08_g16190' => 'ccan', 'Cc11_g11480' => 'ccan', 'CDE02G0153' => 'cde', 'CDE02G2674' => 'cde', 'CDE02G3976' => 'cde', 'CDE05G3648' => 'cde', 'CDE08G0980' => 'cde', 'CDE09G1327' => 'cde', 'CDE10G0430' => 'cde', 'CDE10G1239' => 'cde', 'Cfa003799' => 'cfa', 'Cfa007704' => 'cfa', 'Cfa008841' => 'cfa', 'Cfa011989' => 'cfa', 'Cfa012982' => 'cfa', 'Cfa016226' => 'cfa', 'Cfa019952' => 'cfa', 'Cfa027291' => 'cfa', 'Ciclev10011271m.g' => 'ccl', 'Ciclev10011391m.g' => 'ccl', 'Ciclev10019356m.g' => 'ccl', 'Ciclev10019418m.g' => 'ccl', 'Ciclev10019472m.g' => 'ccl', 'Ciclev10030931m.g' => 'ccl', 'CiPaw.02G040900' => 'cil', 'CiPaw.03G082100' => 'cil', 'CiPaw.05G120900' => 'cil', 'CiPaw.06G095400' => 'cil', 'CiPaw.09G051800' => 'cil', 'CiPaw.11G119700' => 'cil', 'CiPaw.12G081800' => 'cil', 'ClCG04G005880' => 'cla', 'ClCG06G001280' => 'cla', 'COL.COLO4_06283' => 'col', 'COL.COLO4_07133' => 'col', 'COL.COLO4_10653' => 'col', 'COL.COLO4_10714' => 'col', 'COL.COLO4_16757' => 'col', 'COL.COLO4_21701' => 'col', 'COL.COLO4_27781' => 'col', 'COL.COLO4_28845' => 'col', 'Cpa.g.sc1.172' => 'cpa', 'Cpa.g.sc14.244' => 'cpa', 'Cpa.g.sc289.7' => 'cpa', 'Cpa.g.sc3.223' => 'cpa', 'Cpa.g.sc3.78' => 'cpa', 'Cpa.g.sc3.81' => 'cpa', 'Cpa.g.sc79.17' => 'cpa', 'Cpa.g.sc96.21' => 'cpa', 'Cre02.g100300' => 'cre', 'CsaV3_4G029250' => 'csa', 'CsaV3_5G033530' => 'csa', 'CsaV3_6G007210' => 'csa', 'CsaV3_6G035900' => 'csa', 'CSS0001291' => 'camsi', 'CSS0008640' => 'camsi', 'CSS0011543' => 'camsi', 'CSS0019396' => 'camsi', 'CSS0019587' => 'camsi', 'CSS0020269' => 'camsi', 'CSS0037982' => 'camsi', 'CSS0039819' => 'camsi', 'CSS0039947' => 'camsi', 'CSS0049592' => 'camsi', 'CSS0049689' => 'camsi', 'CSS0050524' => 'camsi', 'DCAR_005390' => 'dca', 'DCAR_013531' => 'dca', 'DCAR_016889' => 'dca', 'DCAR_020321' => 'dca', 'DCAR_025254' => 'dca', 'Dinv04214' => 'din', 'Dinv04417' => 'din', 'Dinv15576' => 'din', 'Dinv17467' => 'din', 'Dinv29285' => 'din', 'Dinv32593' => 'din', 'Dinv34013' => 'din', 'Dinv34901' => 'din', 'Dinv37521' => 'din', 'Dinv38775' => 'din', 'Dinv38824' => 'din', 'Duzib068G0133' => 'dzi', 'Duzib084G0972' => 'dzi', 'Duzib128G0496' => 'dzi', 'Duzib133G1361' => 'dzi', 'Duzib138G0613' => 'dzi', 'Duzib138G1145' => 'dzi', 'Duzib205G1082' => 'dzi', 'Duzib211G0065' => 'dzi', 'Duzib248G1109' => 'dzi', 'Duzib251G0617' => 'dzi', 'Duzib268G1875' => 'dzi', 'ECA233G1899' => 'eca', 'ECA233G3762' => 'eca', 'ECA233G4759' => 'eca', 'ECA234G0710' => 'eca', 'ECA236G0965' => 'eca', 'ECA236G3648' => 'eca', 'ECA238G1219' => 'eca', 'ECA240G1303' => 'eca', 'ECA240G2403' => 'eca', 'ECA246G3739' => 'eca', 'ECA247G0869' => 'eca', 'EL10Ac1g00265' => 'bvu', 'EL10Ac2g04428' => 'bvu', 'EL10Ac3g05288' => 'bvu', 'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ), 'gf_id' => 'HOM05D000630', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000630' ), 'data_identifier' => 'HOM05D000630', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000630', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '904', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14780' => 'bna', 'A03p22990' => 'bna', 'A03p25690' => 'bna', 'A04p31230' => 'bna', 'A04p34390' => 'bna', 'A06p35030' => 'bna', 'A06p42810' => 'bna', 'A08p27270' => 'bna', 'A09p06580' => 'bna', 'A09p14370' => 'bna', 'A09p14680' => 'bna', 'A09p39750' => 'bna', 'A09p49480' => 'bna', 'A10p00820' => 'bna', 'A10p01130' => 'bna', 'Aa31LG10G11420' => 'aar', 'Aa31LG11G3470' => 'aar', 'Aa31LG1G27850' => 'aar', 'Aa31LG2G1460' => 'aar', 'Aa31LG2G6890' => 'aar', 'Aa31LG3G1250' => 'aar', 'Aa31LG7G8750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2996' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3125' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.564' => 'aag', 'Actinidia03167' => 'ach', 'Actinidia06150' => 'ach', 'Actinidia07762' => 'ach', 'Actinidia10140' => 'ach', 'Actinidia13409' => 'ach', 'Actinidia22735' => 'ach', 'Actinidia24043' => 'ach', 'Actinidia31925' => 'ach', 'Actinidia37855' => 'ach', 'Ah.01g013410' => 'amhyb', 'Ah.03g137440' => 'amhyb', 'Ah.04g150550' => 'amhyb', 'Ah.07g205640' => 'amhyb', 'Ah.12g052630' => 'amhyb', 'Ah.13g070290' => 'amhyb', 'Ah.16g100960' => 'amhyb', 'AL1G25430' => 'aly', 'AL1G39470' => 'aly', 'AL1G40970' => 'aly', 'AL2G10390' => 'aly', 'AL4G38800' => 'aly', 'AL4G45910' => 'aly', 'AL5G13700' => 'aly', 'AL5G37970' => 'aly', 'AL6G35660' => 'aly', 'AL8G15420' => 'aly', 'Aqoxy3G00557' => 'aox', 'Aqoxy3G03760' => 'aox', 'Aqoxy5G04238' => 'aox', 'Aqoxy7G00084' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2Z2S4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K6EEL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHHZ4H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4V3K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAFQ9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HRV1ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA8S0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L7E4K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LVRM3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S68IDS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5IY8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR389G' => 'arhy', 'AT1G13640' => 'ath', 'AT1G26270' => 'ath', 'AT1G27535' => 'ath', 'AT1G67635' => 'ath', 'AT2G03890' => 'ath', 'AT2G40850' => 'ath', 'AT2G46500' => 'ath', 'AT3G56600' => 'ath', 'AT5G24240' => 'ath', 'ATR0602G084' => 'atr', 'ATR0691G146' => 'atr', 'ATR1125G045' => 'atr', 'Atru.chr1.1377' => 'acertr', 'Atru.chr11.1547' => 'acertr', 'Atru.chr11.1548' => 'acertr', 'Atru.chr2.1789' => 'acertr', 'Atru.chr8.615' => 'acertr', 'Atru.chr9.1967' => 'acertr', 'Atru.chr9.607' => 'acertr', 'AUR62004496' => 'cqu', 'AUR62006094' => 'cqu', 'AUR62007863' => 'cqu', 'AUR62009470' => 'cqu', 'AUR62010854' => 'cqu', 'AUR62018413' => 'cqu', 'AUR62019398' => 'cqu', 'AUR62019852' => 'cqu', 'AUR62021030' => 'cqu', 'AUR62023148' => 'cqu', 'AUR62023457' => 'cqu', 'BcaB01g01975' => 'bca', 'BcaB01g03212' => 'bca', 'BcaB01g03509' => 'bca', 'BcaB02g06462' => 'bca', 'BcaB02g09680' => 'bca', 'BcaB03g11985' => 'bca', 'BcaB03g15794' => 'bca', 'BcaB04g18354' => 'bca', 'BcaB04g19832' => 'bca', 'BcaB06g29181' => 'bca', 'BcaB07g30642' => 'bca', 'BcaB07g31499' => 'bca', 'BcaC01g01735' => 'bca', 'BcaC01g05062' => 'bca', 'BcaC01g05372' => 'bca', 'BcaC02g07034' => 'bca', 'BcaC02g12852' => 'bca', 'BcaC04g22617' => 'bca', 'BcaC04g23529' => 'bca', 'BcaC04g23535' => 'bca', 'BcaC05g25271' => 'bca', 'BcaC05g26423' => 'bca', 'BcaC05g26640' => 'bca', 'BcaC06g31139' => 'bca', 'BcaC07g39969' => 'bca', 'BcaC07g40136' => 'bca', 'BcaC07g40137' => 'bca', 'BcaC07g40138' => 'bca', 'BcaNung01216' => 'bca', 'BcaNung01802' => 'bca', 'BcaNung05543' => 'bca', 'BolC1t01769H' => 'bol', 'BolC3t15108H' => 'bol', 'BolC3t15413H' => 'bol', 'BolC3t19552H' => 'bol', 'BolC4t28365H' => 'bol', 'BolC4t28706H' => 'bol', 'BolC5t28869H' => 'bol', 'BolC5t28898H' => 'bol', 'BolC5t29898H' => 'bol', 'BolC5t31198H' => 'bol', 'BolC7t43956H' => 'bol', 'BolC7t44878H' => 'bol', 'BolC8t50805H' => 'bol', 'BolC9t53644H' => 'bol', 'BolC9t53647H' => 'bol', 'BolC9t54631H' => 'bol', 'BolC9t54675H' => 'bol', 'BraA01t01419Z' => 'bra', 'BraA03t11522Z' => 'bra', 'BraA03t11783Z' => 'bra', 'BraA04t18579Z' => 'bra', 'BraA04t18900Z' => 'bra', 'BraA06t26426Z' => 'bra', 'BraA06t27193Z' => 'bra', 'BraA08t34671Z' => 'bra', 'BraA09t36302Z' => 'bra', 'BraA09t36304Z' => 'bra', 'BraA09t37084Z' => 'bra', 'BraA09t37114Z' => 'bra', 'BraA09t39477Z' => 'bra', 'BraA09t40401Z' => 'bra', 'BraA10t42392Z' => 'bra', 'C01p18340' => 'bna', 'C01p18460' => 'bna', 'C03p27260' => 'bna', 'C03p30630' => 'bna', 'C03p72540' => 'bna', 'C04p68600' => 'bna', 'C04p72190' => 'bna', 'C05p00860' => 'bna', 'C05p01160' => 'bna', 'C05p11450' => 'bna', 'C05p24620' => 'bna', 'C07p34270' => 'bna', 'C07p43510' => 'bna', 'C08p31860' => 'bna', 'C09p07320' => 'bna', 'C09p17290' => 'bna', 'C09p17770' => 'bna', 'CAN.G1415.30' => 'can', 'CAN.G1804.16' => 'can', 'CAN.G383.10' => 'can', 'CAN.G611.4' => 'can', 'CAN.G680.10' => 'can', 'CAN.G73.8' => 'can', 'CAN.G825.14' => 'can', 'CAN.G959.18' => 'can', 'CAN.G968.4' => 'can', 'CANSAT21G0876' => 'cansat', 'CANSAT21G2576' => 'cansat', 'CANSAT56G2781' => 'cansat', 'CANSAT64G1117' => 'cansat', 'CANSAT64G2414' => 'cansat', 'CARHR001450' => 'chi', 'CARHR014020' => 'chi', 'CARHR025640' => 'chi', 'CARHR046470' => 'chi', 'CARHR135970' => 'chi', 'CARHR141820' => 'chi', 'CARHR146280' => 'chi', 'CARHR166710' => 'chi', 'CARHR189300' => 'chi', 'Carub.0001s1337' => 'cru', 'Carub.0001s2470' => 'cru', 'Carub.0002s0031' => 'cru', 'Carub.0004s2317' => 'cru', 'Carub.0004s2919' => 'cru', 'Carub.0005s0304' => 'cru', 'Carub.0005s2334' => 'cru', 'Carub.0006s2200' => 'cru', 'Ca_02753_v3' => 'car', 'Ca_06952_v3' => 'car', 'Ca_08699_v3' 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'EL10Ac3g07300' => 'bvu', 'EL10Ac5g12930' => 'bvu', 'EL10Ac6g14663' => 'bvu', 'Eucgr.D01752' => 'egr', 'Eucgr.D02378' => 'egr', 'Eucgr.E04280' => 'egr', 'Eucgr.G00381' => 'egr', 'Eucgr.G02416' => 'egr', 'Eucgr.J01417' => 'egr', 'Eucgr.K00373' => 'egr', 'Eucgr.K01678' => 'egr', 'FAN01G2264' => 'fan', 'FAN01G2735' => 'fan', 'FAN01G2793' => 'fan', 'FAN02G3181' => 'fan', 'FAN03G1379' => 'fan', 'FAN04G0917' => 'fan', 'FAN04G2655' => 'fan', 'FAN05G0621' => 'fan', 'FAN06G0780' => 'fan', 'FAN06G0956' => 'fan', 'FAN06G1301' => 'fan', 'FAN06G1315' => 'fan', 'FAN06G3092' => 'fan', 'FAN06G3590' => 'fan', 'FAN06G3767' => 'fan', 'FAN06G4310' => 'fan', 'FAN07G0941' => 'fan', 'FAN08G0923' => 'fan', 'FAN09G0609' => 'fan', 'FAN10G0485' => 'fan', 'FAN10G0497' => 'fan', 'FAN10G1600' => 'fan', 'FAN10G2463' => 'fan', 'FAN10G2606' => 'fan', 'FAN10G3466' => 'fan', 'FAN11G0755' => 'fan', 'FAN11G1004' => 'fan', 'FAN11G1156' => 'fan', 'FAN11G1584' => 'fan', 'FAN11G2470' => 'fan', 'FAN11G2951' => 'fan', 'FAN11G3198' => 'fan', 'FAN11G3316' => 'fan', 'FAN11G3857' => 'fan', 'FAN13G1333' => 'fan', 'FAN13G2426' => 'fan', 'FAN14G5109' => 'fan', 'FAN17G0305' => 'fan', 'FAN18G0298' => 'fan', 'FAN18G2479' => 'fan', 'FAN18G3864' => 'fan', 'FAN19G1080' => 'fan', 'FAN20G3177' => 'fan', 'FAN21G0094' => 'fan', 'FAN21G0210' => 'fan', 'FAN21G2265' => 'fan', 'FAN21G2819' => 'fan', 'FAN21G3077' => 'fan', 'FAN21G3244' => 'fan', 'FAN22G0986' => 'fan', 'FAN23G0614' => 'fan', 'FAN25G1228' => 'fan', 'FAN26G1595' => 'fan', 'FAN28G1802' => 'fan', 'FvH4_1g29290' => 'fve', 'FvH4_3g34470' => 'fve', 'FvH4_3g34490' => 'fve', 'FvH4_3g34510' => 'fve', 'FvH4_3g34520' => 'fve', 'FvH4_3g34530' => 'fve', 'FvH4_4g29190' => 'fve', 'FvH4_5g04790' => 'fve', 'FvH4_5g13340' => 'fve', 'FvH4_6g46200' => 'fve', 'FvH4_7g16460' => 'fve', 'FvH4_7g31390' => 'fve', 'FvH4_7g31400' => 'fve', 'FvH4_7g31410' => 'fve', 'FvH4_7g31640' => 'fve', 'Glyma.01G067000' => 'gma', 'Glyma.01G226200' => 'gma', 'Glyma.02G123700' => 'gma', 'Glyma.03G121200' => 'gma', 'Glyma.03G257600' => 'gma', 'Glyma.04G236100' => 'gma', 'Glyma.05G217600' => 'gma', 'Glyma.07G055500' => 'gma', 'Glyma.08G023600' => 'gma', 'Glyma.08G253000' => 'gma', 'Glyma.11G016600' => 'gma', 'Glyma.16G024200' => 'gma', 'Glyma.18G275600' => 'gma', 'Glyma.19G125900' => 'gma', 'Glyma.19G256100' => 'gma', 'Gohir.A02G099700' => 'ghi', 'Gohir.A05G414700' => 'ghi', 'Gohir.A07G058200' => 'ghi', 'Gohir.A07G137400' => 'ghi', 'Gohir.A08G112500' => 'ghi', 'Gohir.A11G096800' => 'ghi', 'Gohir.A12G057600' => 'ghi', 'Gohir.A12G112300' => 'ghi', 'Gohir.A12G159101' => 'ghi', 'Gohir.A12G237500' => 'ghi', 'Gohir.A13G001400' => 'ghi', 'Gohir.A13G088800' => 'ghi', 'Gohir.D03G084000' => 'ghi', 'Gohir.D04G001432' => 'ghi', 'Gohir.D07G063001' => 'ghi', 'Gohir.D07G142650' => 'ghi', 'Gohir.D07G142700' => 'ghi', 'Gohir.D08G125500' => 'ghi', 'Gohir.D11G101500' => 'ghi', 'Gohir.D12G057400' => 'ghi', 'Gohir.D12G115900' => 'ghi', 'Gohir.D12G162300' => 'ghi', 'Gohir.D12G238700' => 'ghi', 'Gohir.D13G000800' => 'ghi', 'Gohir.D13G086000' => 'ghi', 'Gorai.001G066500' => 'gra', 'Gorai.001G154500' => 'gra', 'Gorai.003G078600' => 'gra', 'Gorai.004G132400' => 'gra', 'Gorai.007G108300' => 'gra', 'Gorai.008G060400' => 'gra', 'Gorai.008G125500' => 'gra', 'Gorai.008G175000' => 'gra', 'Gorai.008G255600' => 'gra', 'Gorai.012G002500' => 'gra', 'Gorai.013G000700' => 'gra', 'Gorai.013G098100' => 'gra', 'GSVIVG01008166001' => 'vvi', 'GSVIVG01010108001' => 'vvi', 'GSVIVG01019552001' => 'vvi', 'GSVIVG01025809001' => 'vvi', 'GSVIVG01027150001' => 'vvi', 'GSVIVG01036529001' => 'vvi', 'GSVIVG01038547001' => 'vvi', 'HanXRQChr03g0083381' => 'han', 'HanXRQChr04g0109561' => 'han', 'HanXRQChr04g0113921' => 'han', 'HanXRQChr04g0120561' => 'han', 'HanXRQChr04g0125611' => 'han', 'HanXRQChr05g0147201' => 'han', 'HanXRQChr06g0170711' => 'han', 'HanXRQChr06g0177311' => 'han', 'HanXRQChr07g0190821' => 'han', 'HanXRQChr08g0215001' => 'han', 'HanXRQChr08g0229581' => 'han', 'HanXRQChr10g0294271' => 'han', 'HanXRQChr11g0347121' => 'han', 'HanXRQChr12g0365101' => 'han', 'HanXRQChr13g0415391' => 'han', 'HanXRQChr15g0475611' => 'han', 'HanXRQChr16g0528591' => 'han', 'Haze_00216' => 'cav', 'Haze_09081' => 'cav', 'Haze_14371' => 'cav', 'Haze_15660' => 'cav', 'Haze_20286' => 'cav', 'Hma1.2p1_0235F.1_g098660' => 'hma', 'Hma1.2p1_1426F.1_g282860' => 'hma', 'Hma1.2p1_2195F.1_g316820' => 'hma', 'Hma1.2p1_2910F.1_g330190' => 'hma', 'Hma1.2p1_3059F.1_g332200' => 'hma', 'HPP92_005281' => 'vpl', 'HPP92_008815' => 'vpl', 'HPP92_014256' => 'vpl', 'HPP92_018240' => 'vpl', 'HPP92_021670' => 'vpl', 'HPP92_024619' => 'vpl', 'Hund05813' => 'sun', 'Hund11664' => 'sun', 'Hund14213' => 'sun', 'Hund16244' => 'sun', 'Hund16715' => 'sun', 'Hund21001' => 'sun', 'Hund27195' => 'sun', 'Lalb_Chr04g0254431' => 'lal', 'Lalb_Chr04g0255391' => 'lal', 'Lalb_Chr04g0258361' => 'lal', 'Lalb_Chr04g0261521' => 'lal', 'Lalb_Chr05g0211491' => 'lal', 'Lalb_Chr05g0224051' => 'lal', 'Lalb_Chr08g0240271' => 'lal', 'Lalb_Chr09g0320611' => 'lal', 'Lalb_Chr10g0099251' => 'lal', 'Lalb_Chr10g0100571' => 'lal', 'Lalb_Chr14g0365461' => 'lal', 'Lalb_Chr15g0076291' => 'lal', 'Lalb_Chr16g0376891' => 'lal', 'Lalb_Chr16g0376901' => 'lal', 'Lalb_Chr16g0376911' => 'lal', 'Lalb_Chr16g0390681' => 'lal', 'Lalb_Chr17g0342711' => 'lal', 'Lalb_Chr18g0044471' => 'lal', 'Lalb_Chr22g0357941' => 'lal', 'Lj1A1016T76' => 'lonja', 'Lj1A1016T78' => 'lonja', 'Lj1g0001829' => 'lja', 'Lj1g0013094' => 'lja', 'Lj1g0023139' => 'lja', 'Lj1g0025334' => 'lja', 'Lj1P1019T31' => 'lonja', 'Lj1P1081T36' => 'lonja', 'Lj2A165T42' => 'lonja', 'Lj2g0018880' => 'lja', 'Lj2P1192T36' => 'lonja', 'Lj3g0025781' => 'lja', 'Lj3P1026T50' => 'lonja', 'Lj4g0017473' => 'lja', 'Lj4P702T12' => 'lonja', 'Lj5C136T16' => 'lonja', 'Lj6P773T87' => 'lonja', 'Lj7A500G122' => 'lonja', 'LjContig00222g0022390' => 'lja', 'Lsat_1_v5_gn_0_2461' => 'lsa', 'Lsat_1_v5_gn_0_2481' => 'lsa', 'Lsat_1_v5_gn_1_14841' => 'lsa', 'Lsat_1_v5_gn_3_106581' => 'lsa', 'Lsat_1_v5_gn_3_140280' => 'lsa', 'Lsat_1_v5_gn_4_21041' => 'lsa', 'Lsat_1_v5_gn_6_83780' => 'lsa', 'Lsat_1_v5_gn_7_1081' => 'lsa', 'Lsat_1_v5_gn_8_36901' => 'lsa', 'Lsat_1_v5_gn_8_83920' => 'lsa', 'Manes.01G104300' => 'mes', 'Manes.01G246300' => 'mes', 'Manes.02G008900' => 'mes', 'Manes.02G060500' => 'mes', 'Manes.02G142900' => 'mes', 'Manes.05G022700' => 'mes', 'Manes.05G088275' => 'mes', 'Manes.06G078900' => 'mes', 'Manes.08G162100' => 'mes', 'Manes.11G087434' => 'mes', 'Manes.13G063775' => 'mes', 'Manes.14G090900' => 'mes', 'Manes.18G038350' => 'mes', 'Mapoly0001s0203' => 'mpo', 'Mapoly0061s0035' => 'mpo', 'MBI06_g41631_MAGBIO' => 'mbi', 'MBI06_g46250_MAGBIO' => 'mbi', 'MBI07_g39844_MAGBIO' => 'mbi', 'MBI14_g16238_MAGBIO' => 'mbi', 'MBI14_g40427_MAGBIO' => 'mbi', 'MBI15_g22408_MAGBIO' => 'mbi', 'MCO11G617' => 'mco', 'MD00G1140900' => 'mdo', 'MD01G1081200' => 'mdo', 'MD06G1109000' => 'mdo', 'MD07G1150000' => 'mdo', 'MD13G1055800' => 'mdo', 'MD14G1129900' => 'mdo', 'MD14G1217200' => 'mdo', 'MD16G1054900' => 'mdo', 'MD17G1066800' => 'mdo', 'Medtr0009s0120' => 'mtr', 'Medtr3g091400' => 'mtr', 'Medtr5g009120' => 'mtr', 'Medtr7g017360' => 'mtr', 'Medtr7g105910' => 'mtr', 'Medtr7g117395' => 'mtr', 'Medtr8g027610' => 'mtr', 'Medtr8g066090' => 'mtr', 'Medtr8g099565' => 'mtr', 'MELO3C011397.2' => 'cme', 'MELO3C012171.2' => 'cme', 'MELO3C019132.2' => 'cme', 'MELO3C022406.2' => 'cme', 'Migut.B01874' => 'egut', 'Migut.E00255' => 'egut', 'Migut.E01257' => 'egut', 'Migut.J01612' => 'egut', 'Migut.K00160' => 'egut', 'Migut.L01157' => 'egut', 'MSTRG.13473' => 'ama', 'MSTRG.17344' => 'ama', 'MSTRG.1802' => 'ama', 'MSTRG.19775' => 'ama', 'MSTRG.20905' => 'ama', 'MSTRG.26178' => 'ama', 'MSTRG.27030' => 'ama', 'MSTRG.7726' => 'ama', 'MSTRG.8656' => 'ama', 'MSTRG.8657' => 'ama', 'Nitab4.5_0000123g0270' => 'nta', 'Nitab4.5_0000172g0510' => 'nta', 'Nitab4.5_0000258g0180' => 'nta', 'Nitab4.5_0000259g0160' => 'nta', 'Nitab4.5_0000726g0010' => 'nta', 'Nitab4.5_0001071g0080' => 'nta', 'Nitab4.5_0001210g0140' => 'nta', 'Nitab4.5_0001270g0010' => 'nta', 'Nitab4.5_0002914g0110' => 'nta', 'Nitab4.5_0004010g0050' => 'nta', 'Nitab4.5_0006775g0040' => 'nta', 'Nitab4.5_0007082g0030' => 'nta', 'Nitab4.5_0008737g0020' => 'nta', 'Nitab4.5_0011848g0010' => 'nta', 'Nitab4.5_0013533g0010' => 'nta', 'Nitab4.5_0013740g0020' => 'nta', 'Nitab4.5_0025227g0010' => 'nta', 'Nn1g00239' => 'nnu', 'Nn4g23553' => 'nnu', 'Nn7g37017' => 'nnu', 'Oeu001648.1' => 'oeu', 'Oeu004948.1' => 'oeu', 'Oeu009518.1' => 'oeu', 'Oeu021810.1' => 'oeu', 'Oeu024149.2' => 'oeu', 'Oeu038546.2' => 'oeu', 'Oeu040726.1' => 'oeu', 'Oeu041051.1' => 'oeu', 'Oeu051378.3' => 'oeu', 'Oeu055029.2' => 'oeu', 'Oeu055075.1' => 'oeu', 'Oeu057809.3' => 'oeu', 'Os01g0234850' => 'osa', 'Os01g0270700' => 'osa', 'Os02g0290500' => 'osa', 'Os04g0668700' => 'osa', 'Os05g0590100' => 'osa', 'Os06g0283400' => 'osa', 'Os06g0340600' => 'osa', 'Os08g0274775' => 'osa', 'Os08g0489800' => 'osa', 'Os09g0474800' => 'osa', 'Os11g0188100' => 'osa', 'Peaxi162Scf00003g05373' => 'pax', 'Peaxi162Scf00003g05374' => 'pax', 'Peaxi162Scf00074g00733' => 'pax', 'Peaxi162Scf00117g01015' => 'pax', 'Peaxi162Scf00188g00106' => 'pax', 'Peaxi162Scf00716g00019' => 'pax', 'Peaxi162Scf00717g00315' => 'pax', 'Peaxi162Scf00786g00015' => 'pax', 'Peaxi162Scf00884g00004' => 'pax', 'PGR031G2030' => 'pgr', 'PGR031G3141' => 'pgr', 'PGR042G3748' => 'pgr', 'PGR119G0726' => 'pgr', 'PGR142G1267' => 'pgr', 'PGR142G3245' => 'pgr', 'PGSC0003DMG400000114' => 'stu', 'PGSC0003DMG400001935' => 'stu', 'PGSC0003DMG400007037' => 'stu', 'PGSC0003DMG400007183' => 'stu', 'PGSC0003DMG400009125' => 'stu', 'PGSC0003DMG400012141' => 'stu', 'PGSC0003DMG400019641' => 'stu', 'Phvul.001G117800' => 'pvu', 'Phvul.002G165100' => 'pvu', 'Phvul.002G299000' => 'pvu', 'Phvul.003G037500' => 'pvu', 'Phvul.006G113400' => 'pvu', 'Phvul.008G025300' => 'pvu', 'Phvul.009G052900' => 'pvu', 'Phvul.010G114500' => 'pvu', 'Potri.001G090300' => 'ptr', 'Potri.002G171400' => 'ptr', 'Potri.006G031600' => 'ptr', 'Potri.008G112200' => 'ptr', 'Potri.010G137400' => 'ptr', 'Potri.012G014600' => 'ptr', 'Potri.014G099000' => 'ptr', 'Potri.015G013600' => 'ptr', 'Potri.017G101500' => 'ptr', 'Pp3c10_12670' => 'ppa', 'Pp3c15_16610' => 'ppa', 'Pp3c3_15340' => 'ppa', 'Pp3c9_16810' => 'ppa', 'PRCOL_00000890' => 'pco', 'Prupe.1G295100' => 'ppe', 'Prupe.2G188900' => 'ppe', 'Prupe.2G310500' => 'ppe', 'Prupe.3G247900' => 'ppe', 'Prupe.5G121800' => 'ppe', 'Prupe.5G210600' => 'ppe', 'Prupe.7G019100' => 'ppe', 'Psat0s1344g0040' => 'psa', 'Psat0s698g0120' => 'psa', 'Psat2g087120' => 'psa', 'Psat2g185960' => 'psa', 'Psat3g002560' => 'psa', 'Psat3g203800' => 'psa', 'Psat4g161400' => 'psa', 'Psat5g078680' => 'psa', 'Psat7g024400' => 'psa', 'PSO017G4675' => 'pso', 'PSO063G2059' => 'pso', 'PSO063G3493' => 'pso', 'PSO135G0034' => 'pso', 'PSO170G2107' => 'pso', 'PSO339G0398' => 'pso', 'PSO384G3402' => 'pso', 'PSO384G5004' => 'pso', 'PSO478G2258' => 'pso', 'PSO782G3062' => 'pso', 'QL02p030152' => 'qlo', 'QL02p065079' => 'qlo', 'QL04p060787' => 'qlo', 'QL07p013731' => 'qlo', 'QL09p009358' => 'qlo', 'QL10p021028' => 'qlo', 'RcHm_v2.0_Chr1g0359561' => 'rch', 'RcHm_v2.0_Chr1g0380721' => 'rch', 'RcHm_v2.0_Chr2g0119281' => 'rch', 'RcHm_v2.0_Chr2g0164641' => 'rch', 'RcHm_v2.0_Chr3g0494791' => 'rch', 'RcHm_v2.0_Chr4g0437261' => 'rch', 'RcHm_v2.0_Chr7g0183801' => 'rch', 'RcHm_v2.0_Chr7g0194461' => 'rch', 'Rhsim01G0172600' => 'rsi', 'Rhsim02G0244900' => 'rsi', 'Rhsim07G0004100' => 'rsi', 'Rhsim09G0205600' => 'rsi', 'Rhsim12G0070900' => 'rsi', 'RhsimUnG0019700' => 'rsi', 'Sabra01G0066500' => 'sbr', 'Sabra08G0085000' => 'sbr', 'Sabra10G0106000' => 'sbr', 'Sabra12G0017200' => 'sbr', 'Sabra14G0072600' => 'sbr', 'Sabra15G0011200' => 'sbr', 'Sabra17G0087300' => 'sbr', 'SalBow1G0032' => 'sbo', 'SalBow2G0174' => 'sbo', 'SalBow6G1231' => 'sbo', 'Sc01g0002650' => 'sci', 'Sc01g0002660' => 'sci', 'Sc04g0007310' => 'sci', 'Sc07g0010090' => 'sci', 'Sc10g0000540' => 'sci', 'Sc25g0005570' => 'sci', 'Sed0001568' => 'sed', 'Sed0011463' => 'sed', 'Sed0017989' => 'sed', 'Sed0022352' => 'sed', 'Sed0027795' => 'sed', 'SEGI_06280' => 'sgi', 'SEGI_11888' => 'sgi', 'SEGI_15464' => 'sgi', 'SEGI_21338' => 'sgi', 'SEGI_38239' => 'sgi', 'SEGI_39065' => 'sgi', 'SEGI_41522' => 'sgi', 'SGA_v2.0_scaffold111G31404' => 'sas', 'SGA_v2.0_scaffold16G07832' => 'sas', 'SGA_v2.0_scaffold192G40553' => 'sas', 'SGA_v2.0_scaffold24G10701' => 'sas', 'SGA_v2.0_scaffold287G47192' => 'sas', 'SGA_v2.0_scaffold43G16349' => 'sas', 'SGA_v2.0_scaffold59G20655' => 'sas', 'SGA_v2.0_scaffold66G22306' => 'sas', 'SHI15819' => 'shi', 'SMO114G0116' => 'smo', 'SMO117G0320' => 'smo', 'SMO145G0040' => 'smo', 'SMO198G0023' => 'smo', 'SMO270G0116' => 'smo', 'Solyc01g095990.3' => 'sly', 'Solyc03g083350.3' => 'sly', 'Solyc04g005270.1' => 'sly', 'Solyc05g010810.1' => 'sly', 'Solyc05g050590.3' => 'sly', 'Solyc08g082480.3' => 'sly', 'Solyc10g078170.3' => 'sly', 'Sopen00g002420' => 'spe', 'Sopen01g039710' => 'spe', 'Sopen03g023100' => 'spe', 'Sopen04g001250' => 'spe', 'Sopen05g029030' => 'spe', 'Sopen08g030730' => 'spe', 'Sopen10g028850' => 'spe', 'Sp1g12270' => 'spa', 'Sp1g22400' => 'spa', 'Sp2g00280' => 'spa', 'Sp2g14690' => 'spa', 'Sp2g23120' => 'spa', 'Sp4g23180' => 'spa', 'Sp4g28520' => 'spa', 'Sp4g28530' => 'spa', 'Sp5g05960' => 'spa', 'TAR371G0073' => 'tar', 'TAR374G0971' => 'tar', 'TAR375G1070' => 'tar', 'TAR622G1367' => 'tar', 'TAR624G0027' => 'tar', 'TAR629G1506' => 'tar', 'TAR629G2917' => 'tar', 'TAR629G3041' => 'tar', 'TAR633G2786' => 'tar', 'THA.LOC104801371' => 'tha', 'THA.LOC104802075' => 'tha', 'THA.LOC104805215' => 'tha', 'THA.LOC104808472' => 'tha', 'THA.LOC104809325' => 'tha', 'THA.LOC104817361' => 'tha', 'THA.LOC104820984' => 'tha', 'THA.LOC104821988' => 'tha', 'THA.LOC104823613' => 'tha', 'THA.LOC104824051' => 'tha', 'THA.LOC104824378' => 'tha', 'Thecc.01G342100' => 'tca', 'Thecc.02G321400' => 'tca', 'Thecc.03G109800' => 'tca', 'Thecc.03G198400' => 'tca', 'Thecc.03G299900' => 'tca', 'Thecc.04G108000' => 'tca', 'Thecc.05G119400' => 'tca', 'Thhalv10001379m.g' => 'esa', 'Thhalv10002798m.g' => 'esa', 'Thhalv10003797m.g' => 'esa', 'Thhalv10003896m.g' => 'esa', 'Thhalv10005874m.g' => 'esa', 'Thhalv10007061m.g' => 'esa', 'Thhalv10007082m.g' => 'esa', 'Thhalv10016454m.g' => 'esa', 'Thhalv10023399m.g' => 'esa', 'Thhalv10026797m.g' => 'esa', 'TPR.G11457' => 'tpr', 'TPR.G14370' => 'tpr', 'TPR.G16804' => 'tpr', 'TPR.G19366' => 'tpr', 'TPR.G20030' => 'tpr', 'TPR.G23184' => 'tpr', 'TPR.G3249' => 'tpr', 'TPR.G3441' => 'tpr', 'TPR.G37935' => 'tpr', 'TPR.G38030' => 'tpr', 'TPR.G4712' => 'tpr', 'TWI15G0557' => 'twi', 'TWI23G0907' => 'twi', 'TWI23G1089' => 'twi', 'TWI53G2074' => 'twi', 'TWI60G0882' => 'twi', 'TWI60G0962' => 'twi', 'TWI74G0059' => 'twi', 'TWI74G0659' => 'twi', 'TWI75G0415' => 'twi', 'TWI79G1713' => 'twi', 'unitig_0.g599' => 'ugi', 'unitig_0.g600' => 'ugi', 'unitig_27.g25223' => 'ugi', 'unitig_52.g17153' => 'ugi', 'unitig_52.g17160' => 'ugi', 'unitig_62.g23702' => 'ugi', 'unitig_62.g23792' => 'ugi', 'unitig_8.g3967' => 'ugi', 'unitig_8.g3968' => 'ugi', 'vmacro07763' => 'vma', 'vmacro10119' => 'vma', 'vmacro11347' => 'vma', 'vmacro12676' => 'vma', 'vmacro13163' => 'vma', 'VMungo0251G1686' => 'vmu', 'VMungo0331G0370' => 'vmu', 'VMungo0540G1291' => 'vmu', 'VMungo1215G0286' => 'vmu', 'VMungo1215G1379' => 'vmu', 'VMungo1309G2310' => 'vmu', 'VMungo1383G2766' => 'vmu', 'VMungo1383G3529' => 'vmu', 'Zm00001eb101380' => 'zma', 'Zm00001eb128610' => 'zma', 'Zm00001eb278110' => 'zma', 'Zm00001eb315900' => 'zma', 'Zm00001eb332980' => 'zma', 'Zm00001eb345210' => 'zma', 'Zm00001eb380650' => 'zma', 'Zm00001eb382540' => 'zma', 'Zm00001eb433200' => 'zma' ) $gf_id = 'HOM05D000630' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000630' ) $data_identifier = 'HOM05D000630' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 7, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 31, 'bol' => (int) 17, 'bra' => (int) 15, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 8, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 8, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 54, 'fve' => (int) 15, 'gma' => (int) 15, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 7, 'lal' => (int) 19, 'lonja' => (int) 11, 'lja' => (int) 8, 'lsa' => (int) 10, 'mes' => (int) 13, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 11, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 7, 'esa' => (int) 10, 'tpr' => (int) 11, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433200' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1